Host-Pathogen Interaction Analysis

Quality-Controlled Sequence Files
FASTA/FASTQ files containing filtered, trimmed, and quality-controlled sequencing reads generated from host–pathogen interaction sequencing data before downstream analysis.
Host & Pathogen Aligned Read Files
BAM/CRAM files containing sequencing reads aligned separately or jointly to host and pathogen reference genomes, including indexed alignment files for downstream analysis and visualisation.
Host Gene Expression Profiling
Quantified host transcript expression data identifying genes and pathways responsive to pathogen exposure, infection progression, or immune activation.
Pathogen Activity & Expression Analysis
Comprehensive profiling of pathogen-derived transcripts or genomic signals, including actively expressed genes, virulence-associated factors, and infection-related molecular activity.
Differential Interaction Analysis
Comparative analysis of molecular changes between infected and control conditions, including differentially expressed host and pathogen genes associated with infection dynamics.
Functional Interaction Interpretation
Integrated biological interpretation of host–pathogen interaction mechanisms, including immune-related pathways, host defence responses, pathogen adaptation strategies, and enriched functional processes.